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R. Filgueira, Grant, J., Stuart, R., and Brown, M. S., Ecosystem modelling for ecosystem-based management of bivalve aquaculture sites in data‑poor environment, Aquacult Environ Interact, vol. 4, pp. 117-133, 2013.
R. Filgueira, Guyondet, T., Comeau, L. A., and Grant, J., A fully-spatial ecosystem-DEB model of oyster (Crassostrea virginica) carrying capacity in the Richibucto Estuary, Eastern Canada, Journal of Marine Systems, vol. 136, pp. 42 - 54, 2014.
R. Filgueira and Grant, J., A Box Model for Ecosystem-Level Management of Mussel Culture Carrying Capacity in a Coastal Bay, Ecosystems, 2009.
R. Filgueira, Strople, L. C., Strohmeier, T., Rastrick, S., and Strand, Ø., Mussels or tunicates: That is the question. Evaluating efficient and sustainable resource use by low-trophic species in aquaculture settings, Journal of Cleaner Production, vol. 231, pp. 132 - 143, 2019.
R. Filgueira, Guyondet, T., Bacher, C., and Comeau, L. A., Informing Marine Spatial Planning (MSP) with numerical modelling: A case-study on shellfish aquaculture in Malpeque Bay (Eastern Canada), Marine Pollution Bulletin, vol. 100, no. 1, pp. 200 - 216, 2015.
R. Filgueira, Guyondet, T., Comeau, L. A., and Grant, J., Physiological indices as indicators of ecosystem status in shellfish aquaculture sites, Ecological Indicators, vol. 39, pp. 134 - 143, 2014.
R. Filgueira, Guyondet, T., Comeau, L. A., and Grant, J., Storm-induced changes in coastal geomorphology control estuarine secondary productivity, Earth's Future, p. n/a - n/a, 2014.
R. Filgueira, Grant, J., Bacher, C., and Carreau, M., A physical–biogeochemical coupling scheme for modeling marine coastal ecosystems, Ecological Informatics, vol. 7, pp. 71-80, 2012.
R. Filgueira, Grant, J., and Strand, Ø., Implementation of marine spatial planning in shellfish aquaculture management: modeling studies in a Norwegian fjord, Ecological Applications, vol. 24, no. 4, pp. 832–843, 2014.
J. L. Foley, Using an individual based model to evaluate the effects of climate change on the reproductive phenology of eelgrass (Zostera marina L.) along a latitudinal gradient (master’s thesis)., 2017.

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