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I need some help related to the nature of flow's direction. I am trying to simulate with a boolean expresion (if) for the direction of a flow depending on concentrations of substrtate between compartments: i.e. If comp A=10 and compB= 20 the flow goes from B to A; else if comp A=20 and B=10 then flow is reversed, from A to B.
I downloaded the free trial version of SIMILE 5.5. Unfortunately, I can't install it in my laptop. I am using Mac OS 10.6.1 (Snow Leopard).
The error says:
Simile error: Simile encountered an unexpected problem: couldn't open "../Run/userinfo.txt": read-only file system
Any assistance will be greatly appreciated. Thank you very much.
Dear Simile support team,
I just bought a license for using Simile standard edition. However, I could not run and save a model, nor open an existing model. Below you’ll find the messages I received from Simile. Could you please give me a hand on that?
I have a model that had 150 layers in 5.0. It still has the appropriate number of layers but when you bring up propertires for the submodel it only indicates 1 layer. If you change the 1 to 150 you end up with a 150,150 xy grid. Alos I have another problem that may not be related to 5.5. In this model I calculate the diffusion of several compounds into a sediment profile. After you compile the initial data should show numbers up to 09 layers and zeros after. This happens in all cases but for O2 which has a negative number in thwe last layer (150). I
I am also finding that my large programs will not open. So I am sending you versions of the same model at different levesls of development for you to play with.
I just updated from 5.3 to 5.5 and now seem to have problems with running my more elaborate models.
The applications opens up and then stops (nothing happens after): displaying the message under "Progress with current operations" Reading information from file.
I have a number of these larger models all do the same. Any ideas? I am attaching one of them to try out
Simile version 5.5 was released on 21st August 2009. It is essentially a maintenance release, but incorporates some new features...
Simile v5.5 contains some new checks that are applied when running a model to make sure it is consistent. These include:
The initial version of the Plant Systems-biology Modelling (PlaSMo) website is now online. The website provides introductory information about the project.