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Simile v5.5 released

Simile version 5.5 was released on 21st August 2009. It is essentially a maintenance release, but incorporates some new features...

New constraint checking
 

Simile v5.5 contains some new checks that are applied when running a model to make sure it is consistent. These include:

Make new version of Simile available to from UberCart downloads

 Make new version of Simile available to from UberCart downloads

Making files available to users

Making files available to users

E-learning discusion Drupal group on www.simulistics.com

The e-learning discusion Drupal group on www.simulistics.com has been created with us all as members.

 

 

Initial version of the Plant Systems-biology Modelling (PlaSMo) website online

The initial version of the Plant Systems-biology Modelling (PlaSMo) website is now online.  The website provides introductory information about the project.

Introduction to Simile

Here's a pdf document which I'm going to use as the basis of a practical class to introduce Simile and how it can be used to develop and analyse a model. It is aimed at undergraduate biology/ecology students whoc will have little if any programming experience and even less mathematics.

This is the first time I've written anything like this. If people see potential pitfalls in the approach or ways to improve the description to make it clearer then I'd like to hear about it.

Jon

Simile Error messages difficult to understand

Hi

I'm just starting to use Simile for an undergraduate course I'm giving. On the whole the program looks very good, and I think it will be an excellent teaching resource. An the fact that the evaluation edition is available is important for giving students long-term access to the program.

Reporter: 
jyearsle
Created: 
Sun, 17/05/2009 - 10:57
Updated: 
Fri, 12/10/2012 - 11:52

Hannon, B & Ruth, M 1997 "Modelling dynamic biological systems" (Springer, New York)

Attached are the models (and output interfaces) from some of the chapters in the book by Hannon and Ruth.

Hannon, B & Ruth, M 1997 "Modelling dynamic biological systems" (Springer, New York)

 

Chapter 2 has some simple population growth models

Chapter 3 has some stochastic population growth models where death rate is a random variable

Chapter 4 has some population models with time lags that show chaotic behaviour

Chapter 7 has a model for a catalyzed reaction, which could describe enzyme dynamics.

 

 

 

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